Author

Geoffrey D. Hannigan

Merck & Co., Inc., Rahway, NJ, USA (United States)ORCID 0000-0002-7128-2143Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1 Research Focus:software / tool· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Danny A. BittoniD· 2 shared Ondřej KlempířiD· 2 shared Andrej Palička· 1 shared Charles Hadley S. KingiD· 1 shared Christopher H. WoelkiD· 1 shared Dan ChangiD· 1 shared Daria J. HazudaiD· 1 shared David PříhodaiD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

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10 top collaborators · 38 mutual co-author links

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2 shared papersBioinformatics

Danny A. BittonORCID

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2 papers

Recent·Most cited

BioCompute Objects to communicate a viral detection pipeline with potential for use in a regulatory environment

Naila Gulzar, Jonathon Keeney, Jack B. Baker, Ondřej Klempíř, Geoffrey D. Hannigan, Danny A. Bitton, Julia M. Maritz, Charles Hadley S. King, Janisha A. Patel, Paul A. Duncan, Raja Mazumder

The paper presents BioCompute Objects (BCOs) as a standardized framework for communicating computational analyses, demonstrating their use in a viral detection pipeline for regulatory environments.

bioRxiv · Oct 19, 2021 · PreprintBioinformatics

A Deep Learning Genome-Mining Strategy Improves Biosynthetic Gene Cluster Prediction

Geoffrey D. Hannigan, David Příhoda, Andrej Palička, Jindřich Soukup, Ondřej Klempíř, Lena Rampula, Jindrich Durcak, Michael Wurst, Jakub Kotowski, Dan Chang, Rurun Wang, Grazia Piizzi, Gergely Temesi, Daria J. Hazuda, Christopher H. Woelk, Danny A. Bitton

This paper introduces DeepBGC, a deep learning method for improved biosynthetic gene cluster prediction, uncovering previously undetectable clusters with potential novel biological activities.

Nucleic Acids Research · Aug 8, 2019Peer-reviewedBioinformatics