Author

Jakub Kotowski

MSD (Czech Republic)

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 1 Approach:deep learning· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Danny A. BittoniD· 2 shared David PříhodaiD· 2 shared Gergely TemesiiD· 2 shared Ondřej KlempířiD· 2 shared Alejandro Vázquez-Otero· 1 shared Andrej Palička· 1 shared Anna Gromek· 1 shared Christopher H. WoelkiD· 1 shared

Activity by Year

2019-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Danny A. BittonORCID

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Author profile →

2 papers

Recent·Most cited

Mutation Maker, An Open Source Oligo Design Platform for Protein Engineering

Kaori Hiraga, Petr Mejzlík, Matej Marcisin, Nikita Vostrosablin, Anna Gromek, Jakub Arnold, Sebastian Wiewiora, Rastislav Svarba, David Příhoda, Kamila Clarová, Ondřej Klempíř, Josef Navratil, Ondřej Ťupa, Alejandro Vázquez-Otero, Marcin W. Walas, , Danny A. Bitton

Mutation Maker is an open-source tool for designing mutagenic oligos in protein engineering, enabling efficient and accurate library creation for both random and directed mutagenesis.

ACS Synthetic Biology · Jan 12, 2021Peer-reviewedBioinformatics

A Deep Learning Genome-Mining Strategy Improves Biosynthetic Gene Cluster Prediction

Geoffrey D. Hannigan, David Příhoda, Andrej Palička, Jindřich Soukup, Ondřej Klempíř, Lena Rampula, Jindrich Durcak, Michael Wurst, Jakub Kotowski, Dan Chang, Rurun Wang, Grazia Piizzi, Gergely Temesi, Daria J. Hazuda, Christopher H. Woelk, Danny A. Bitton

This paper introduces DeepBGC, a deep learning method for improved biosynthetic gene cluster prediction, uncovering previously undetectable clusters with potential novel biological activities.

Nucleic Acids Research · Aug 8, 2019Peer-reviewedBioinformatics