Author

Vivek Charu

Stanford MedicineORCID 0000-0002-7147-9026Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2 Neuroscience· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Assay:electronic health records· 2 Organism:human· 2 Organism:mouse· 2 Assay:spatial transcriptomics· 2 Assay:bulk RNA-seq· 1

Frequent Co-Authors

Nathan A. BraceyiD· 2 shared Aaron T. MayeriD· 1 shared Alex DahleniD· 1 shared Alexandro E. TrevinoiD· 1 shared Ayano KondoiD· 1 shared Babak RazaviiD· 1 shared Daniel EhrensiD· 1 shared Eric WuiD· 1 shared

Activity by Year

2022-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 18 mutual co-author links

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2 shared papersPathology

Nathan A. BraceyORCID

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Author profile →

4 papers

Recent·Most cited

A multi-omics map of diabetic nephropathy links c-Jun activation to tubular injury and metabolic stress

Qiwen Deng, Yu Liu, Nathan A. Bracey, Yi-Chuan Wang, Paul A. Wadsworth, Marjia Afrin, Matteo Santoro, Shih-Yu Chen, Joseph C. Wu, Vivek Charu, Gerlinde Wernig

This study integrates multi-omics data to identify c-Jun as a key driver of tubular injury and fibrosis in diabetic nephropathy.

bioRxiv · Jun 12, 2026 · PreprintPathology

Electrical Coordinated Reset Stimulation Induces Network Desynchronization in an in Vivo Model of Status Epilepticus

Daniel Ehrens, Fadi Aeed, Yara Otor, Vivek Charu, Babak Razavi, Sridevi V. Sarma, Yitzhak Schiller, Peter Alexander Tass

This study investigates the acute effects of Coordinated Reset stimulation on neural synchronization during Status Epilepticus in an in vivo model, showing reduced synchronization and connectivity measures.

Epilepsy & Behavior · Feb 27, 2025Peer-reviewedNeuroscience

Characterizing tissue structures from spatial omics with spatial cellular graph partition

Zhenqin Wu, Ayano Kondo, Monee McGrady, Ethan A. G. Baker, Eric Wu, Maha K. Rahim, Nathan A. Bracey, Vivek Charu, Raymond Jaihyun Cho, Jeffrey B. Cheng, Maryam Afkarian, James Zou, Aaron T. Mayer, Alexandro E. Trevino

This work introduces SCGP, a method for unsupervised identification of tissue structures from spatial omics data, and demonstrates its application to spatial transcriptomics and proteomics datasets.

bioRxiv · Sep 5, 2023 · PreprintBioinformatics

Sampling bias in large healthcare claims databases

Alex Dahlen, Vivek Charu

The paper examines sampling bias in healthcare claims databases by analyzing socioeconomic and demographic factors in Optum's CDM at the zip-code level in 2018.

bioRxiv · Oct 3, 2022 · PreprintBioinformatics