Jaqueline Brito

pyTCR is a computational notebook platform for TCR-Seq analysis that provides flexibility, transparency, and user-friendliness for researchers with limited computational skills.

TAMPA provides an interpretable visualization tool for metagenomics taxonomic profiles, enabling better biological insights and tool selection.

The paper evaluates metagenomic software tools using realistic datasets, highlighting improvements in assembly and taxon profiling while identifying remaining challenges in virus/archaea detection and reproducibility.

This paper introduces SBT, a software platform that extracts omics features from clinical tumor sequencing data, identifying prognostic biomarkers in lung, breast, and colorectal cancers.

This study benchmarks error-correction methods for next-generation sequencing data, finding significant variation in performance across datasets with no single method being optimal overall.

The paper assesses the installability and archival stability of computational biology tools, finding many are inaccessible or hard to install, and recommends policy changes to improve these aspects.