Julie Marin

Evidence for Neolithic acquisition of the high pathogenic island by Escherichia coli followed by recent selection

The paper traces the evolutionary origin and recent selection of the High Pathogenicity Island in Escherichia coli, linking its acquisition to Neolithic human-animal interactions and modern public health implications.

Genomic evidence of Escherichia coli gut population diversity translocation in leukemia patients

This study examines genomic diversity and selection patterns of Escherichia coli in immunosuppressed patients, finding that translocation to extra-intestinal compartments involves complex selection signatures.

Performances of bioinformatics tools for the analysis of sequencing data of Mycobacterium tuberculosis complex strains

This study evaluates two bioinformatics tools for analyzing MTBC sequencing data, finding high concordance with phenotypic testing and high agreement in lineage determination.

The population genomics of increased virulence and antibiotic resistance in human commensal Escherichia coli over 30 years in France

This study analyzes the genomic evolution of commensal E. coli over 30 years in France, finding increases in virulence and antibiotic resistance genes through clonal expansion and gene frequency changes within clones.