Author

Jean‐Winoc Decousser

École Nationale Vétérinaire d'AlfortORCID 0000-0001-7105-6202Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Organism:E. coli· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Assay:whole-genome sequencing· 2 Research Focus:database / resource· 1 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Research Focus:software / tool· 1

Frequent Co-Authors

Érick DenamuriD· 2 shared Guilhem RoyeriD· 2 shared Catherine BrangeriD· 1 shared Claudine MédigueiD· 1 shared David VallenetiD· 1 shared François BlanquartiD· 1 shared Julie MariniD· 1 shared Mathieu DuboisiD· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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2 shared papersGenomics

Érick DenamurORCID

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2 papers

Recent·Most cited

GenomicsApplied and Environmental MicrobiologyPeer-reviewedJul 18, 2022

The population genomics of increased virulence and antibiotic resistance in human commensal Escherichia coli over 30 years in France

Julie Marin, Olivier Clermont, Guilhem Royer…·François Blanquart

This study analyzes the genomic evolution of commensal E. coli over 30 years in France, finding increases in virulence and antibiotic resistance genes through clonal expansion and gene frequency changes within clones.

48 citationstop 1%

E. coliwhole-genome sequencing

𝕏 PostBluesky

BioinformaticsMicrobial GenomicsPeer-reviewedSep 1, 2018

PlaScope: a targeted approach to assess the plasmidome of Escherichia coli strains

Guilhem Royer, Jean‐Winoc Decousser, Catherine Branger…·David Vallenet

PlaScope improves plasmid detection in E. coli by combining Centrifuge with a curated database, achieving high recall, specificity, and accuracy compared to existing tools.

58 citations

E. coliwhole-genome sequencing

𝕏 PostBluesky