Author

Seamus J. Holden

Newcastle UniversityORCID 0000-0002-7169-907XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Assay:imaging· 2 Research Focus:software / tool· 2 Organism:bacteria (other)· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1 Research Focus:dimensionality reduction· 1 Assay:fluorescence / live-cell microscopy· 1

Frequent Co-Authors

Ahmet Can SolakiD· 1 shared Alexander KrulliD· 1 shared Christoph K. SpahniD· 1 shared Christophe LeterrieriD· 1 shared Daniel KrentzeliD· 1 shared Eleni KarinouiD· 1 shared Elias NehmeiD· 1 shared Florian JugiD· 1 shared

Activity by Year

2021-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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1 shared paperBioinformatics

Ahmet Can SolakORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

micromorph: a Python toolkit for measurement of microbial morphology

Simone Coppola, Seamus J. Holden

micromorph is a Python toolkit for measuring bacterial morphology from light microscopy data, offering accurate and flexible analysis with a documented API and napari plugin.

bioRxiv · Apr 15, 2026 · PreprintMicrobiology

ZeroCostDL4Mic: an open platform to use Deep-Learning in Microscopy

Lucas von Chamier, Romain F. Laine, Johanna Jukkala, Christoph K. Spahn, Daniel Krentzel, Elias Nehme, Martina Lerche, Sara Hernández‐Pérez, Pieta K. Mattila, Eleni Karinou, Seamus J. Holden, Ahmet Can Solak, Alexander Krull, Tim-Oliver Buchholz, Martin L. Jones, , Ricardo Henriques

ZeroCostDL4Mic provides a platform to use deep learning in microscopy, enabling tasks like segmentation and denoising through Google Colab.

Nature Communications · Apr 15, 2021Peer-reviewedBioinformatics