Author

Vivien R. Bonazzi

Deloitte (United States)ORCID 0000-0002-7359-9072Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:benchmark study· 2 Research Focus:benchmarking· 2 Research Focus:database / resource· 1 Approach:statistical model· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Juergen A. KlenkiD· 2 shared Alex Jones· 1 shared Amanda L. CharbonneauiD· 1 shared Avi Ma’ayaniD· 1 shared Brian M. SchilderiD· 1 shared C. Titus BrowniD· 1 shared Claris Castillo· 1 shared Collin J. LobbiD· 1 shared

Activity by Year

2019-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Juergen A. KlenkORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Accelerating genomic workflows using NVIDIA Parabricks

Kyle A. O’Connell, Zelaikha B. Yosufzai, Ross A. Campbell, Collin J. Lobb, Haley T. Engelken, Laura M. Gorrell, Thad B. Carlson, Josh J. Catana, Dina Mikdadi, Vivien R. Bonazzi, Juergen A. Klenk

This study benchmarks NVIDIA Parabricks, a GPU-accelerated software suite, showing significant speedups for germline variant calling and cost savings on cloud platforms.

bioRxiv · Jul 20, 2022 · PreprintBioinformatics

FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources

Daniel J. B. Clarke, Lily Wang, Alex Jones, Megan L. Wojciechowicz, Denis Torre, Kathleen M. Jagodnik, Sherry L. Jenkins, Peter McQuilton, Zachary Flamholz, Moshe C. Silverstein, Brian M. Schilder, Kimberly Robasky, Claris Castillo, Ray Idaszak, Stanley C. Ahalt, , Avi Ma’ayan

FAIRshake evaluates the FAIRness of research digital resources through community-driven metrics, automated assessments, and visualization tools, revealing opportunities for improvement.

Cell Systems · Nov 1, 2019Peer-reviewedBioinformatics