Kimberly Robasky

MCBO: Mammalian Cell Bioprocessing Ontology, A Hub-and-Spoke, IOF-Anchored Application Ontology

MCBO provides a standardized ontology for mammalian cell bioprocessing data to enable harmonization and querying of complex biomanufacturing datasets.

Inferring a cell's capabilities from omics data with ImmCellFie

ImmCellFie infers cell metabolic capabilities from transcriptomic or proteomic data using genome-scale models and provides interactive analysis tools.

What does your cell really do? Model-based assessment of mammalian cells metabolic functionalities using omics data

The paper introduces a framework to predict how changes in omics data affect metabolic functions in mammalian cells using curated metabolic tasks and genome-scale networks.

Transfer learning improves outcome predictions for ASD from gene expression in blood

This paper improves ASD outcome prediction from gene expression using transfer learning, achieving a 7.8% AUROC improvement over a naive model.

FAIRshake: toolkit to evaluate the findability, accessibility, interoperability, and reusability of research digital resources

FAIRshake evaluates the FAIRness of research digital resources through community-driven metrics, automated assessments, and visualization tools, revealing opportunities for improvement.

Semantic Integration of Clinical Laboratory Tests from Electronic Health Records for Deep Phenotyping and Biomarker Discovery

The paper semantically integrates LOINC-encoded laboratory data with the Human Phenotype Ontology to identify asthma biomarkers from EHR data.

TAS2R38 predisposition to bitter taste associated with differential changes in vegetable intake in response to a community-based dietary intervention

The paper examines how TAS2R38 genetic variants affecting bitter taste perception influence vegetable intake in response to different dietary interventions.