Author

Filipe Borges

Howard Hughes Medical InstituteORCID 0000-0002-7388-2118Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Genetics· 1

Signature Assays, Organisms & Methods

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Organism:Arabidopsis· 3 Assay:DNA methylation· 3 Research Focus:gene regulatory network inference· 3 Research Focus:cell type annotation· 2 Approach:experimental assay· 2 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Robert A. MartiensseniD· 3 shared Andrea J. SchorniD· 2 shared Evan ErnstiD· 2 shared Jean‐Sébastien ParentiD· 2 shared Alan G. HendrickiD· 1 shared Ann LiniD· 1 shared Benjamin BerubeiD· 1 shared Charles J. UnderwoodiD· 1 shared

Activity by Year

2018-2024 · peak 1/yr

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10 top collaborators · 27 mutual co-author links

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3 shared papersGenomics

Robert A. MartienssenORCID

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3 papers

Recent·Most cited

Pseudouridine guides germline small RNA transport and epigenetic inheritance

Rowan P. Herridge, Jakub Dolata, Valentina Migliori, Cristiane de Santis Alves, Filipe Borges, Andrea J. Schorn, Frédéric Van Ex, Ann Lin, Mateusz Bajczyk, Jean‐Sébastien Parent, Tommaso Leonardi, Alan G. Hendrick, Tony Kouzarides, Robert A. Martienssen

The paper identifies pseudouridine as a marker for germline small RNAs in plants and mammals, showing its role in epigenetic inheritance through nuclear transport.

Nature Structural & Molecular Biology · Sep 6, 2024Peer-reviewedGenetics

Arabidopsis LTR retrotransposons and their regulation by epigenetically activated small RNA

Seung Cho Lee, Evan Ernst, Benjamin Berube, Filipe Borges, Jean‐Sébastien Parent, Paul J. Ledon, Andrea J. Schorn, Robert A. Martienssen

The paper characterizes LTR retrotransposon activity in Arabidopsis using VLP DNA-seq, revealing transcriptional, post-transcriptional, and reverse transcriptional regulation by easiRNAs.

Genome Research · Apr 1, 2020Peer-reviewedGenomics

Epigenetic activation of meiotic recombination in Arabidopsis centromeres via loss of H3K9me2 and non-CG DNA methylation

Charles J. Underwood, Kyuha Choi, Christophe Lambing, Xiaohui Zhao, Heïdi Serra, Filipe Borges, Joe Simorowski, Evan Ernst, Yannick Jacob, Ian R. Henderson, Robert A. Martienssen

This study shows that disrupting H3K9me2 and non-CG DNA methylation in Arabidopsis increases meiotic DSBs in centromeres and crossovers in pericentromeric heterochromatin.

Genome Research · Apr 1, 2018Peer-reviewedGenomics