Author

Liudmyla Kondratova

University of FloridaORCID 0000-0002-7427-0164Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 2 Research Focus:differential expression· 2 Research Focus:gene regulatory network inference· 2 Organism:human· 2 Assay:long-read sequencing· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1

Frequent Co-Authors

Ana ConesaiD· 2 shared Francisco J. Pardo-PalaciosiD· 2 shared Jorge Mestre‐TomásiD· 2 shared Tianyuan LiuiD· 2 shared Adalena V. NanniiD· 1 shared Adam FrankishiD· 1 shared Alejandro PaniaguaiD· 1 shared Alessandra Martinez-Martin· 1 shared

Activity by Year

2024-2024 · peak 2/yr

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10 top collaborators · 40 mutual co-author links

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2 shared papersGenomics

Ana ConesaORCID

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2 papers

Recent·Most cited

GenomicsNature MethodsPeer-reviewedJun 7, 2024

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Systematic assessment of long-read RNA-seq methods for transcript identification and quantification

Francisco J. Pardo-Palacios, Dingjie Wang, Fairlie Reese…·Angela Norie Brooks

Benchmarking six long-read RNA-seq protocol-platform combinations and 14 tools across human, mouse, and manatee shows read length and accuracy drive isoform detection, depth drives quantification.

235 citationstop 1%

humanmouse

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BioinformaticsNature MethodsPeer-reviewedMar 20, 2024

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SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms

Francisco J. Pardo-Palacios, Ángeles Arzalluz-Luque, Liudmyla Kondratova…·Ana Conesa

SQANTI3 extends long-read transcriptome quality control with transcript-end subcategories, a short-read TSS ratio, rules or random-forest filters and a rescue module, raising SIRV-benchmarked F-score stepwise.

212 citationstop 1%

humanlong-read sequencing

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