Adalena V. Nanni

The paper introduces a method using multi-parent RILs crossed to a tester to dissect cis and trans regulation of gene expression in Drosophila, finding environmental and genetic trans effects in 31% and 19% of loci respectively.

SQANTI3 extends long-read transcriptome quality control with transcript-end subcategories, a short-read TSS ratio, rules or random-forest filters and a rescue module, raising SIRV-benchmarked F-score stepwise.

This paper introduces TranD, a tool for comparing transcriptome structures using nucleotide-level distance metrics to assess transcript complexity and structural differences between species or annotations.

The paper examines how gene regulation, not gene content, contributes to maize genotypes' sensitivity to ozone stress by analyzing gene expression across diverse inbred lines.