Author

Joseph Edward Knoll

Agricultural Research ServiceORCID 0000-0002-7477-4039Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Research Focus:ecology & biodiversity· 1 Research Focus:genome assembly· 1 Assay:metagenomics· 1 Organism:plant (other)· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Addie ThompsoniD· 1 shared Benjamin Kaufman· 1 shared Candice N. HirschiD· 1 shared Chad M. HayesiD· 1 shared Christopher Olson· 1 shared Daniel CrozieriD· 1 shared Dayane Cristina LimaiD· 1 shared Doreen WareiD· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMicrobiology

Addie ThompsonORCID

Mutual co-authors in cluster

Author profile →

2 papers

Recent·Most cited

Development and evaluation of a cost-effective, mid-density SNP array as a sorghum community genotyping resource

Vivek Kumar, Robert R. Klein, Benjamin Kaufman, Noah D. Winans, Daniel Crozier, William L. Rooney, Melanie L. Harrison, Chad M. Hayes, Marcela Karey Tello-Ruiz, Nicholas P. Gladman, Christopher Olson, Gloria B. Burow, Sarah A. Sexton-Bowser, Somashekhar M. Punnuri, Joseph Edward Knoll, , Doreen Ware

The paper develops and validates a mid-density SNP array for sorghum using NGS, showing it performs as well as high-density GBS for trait prediction and breeding applications.

bioRxiv · Feb 23, 2026 · PreprintPlant Biology

Gene-by-Environment Interaction Significantly Drives Bacterial Endophyte Communities in Maize Stalks

Hanxia Li, Holly Kristina Griffis, Jode W. Edwards, Sherry A. Flint-Garcia, Candice N. Hirsch, James Brendan Holland, Joseph Edward Knoll, Dayane Cristina Lima, Natalia de León, Seth C. Murray, Maninder Pal Singh, James C. Schnable, Rajandeep S. Sekhon, Peter R. Thomison, Addie Thompson, Jason G. Wallace

The paper investigates how host genotype and environment interact to shape bacterial endophyte communities in maize stalks, finding that gene-by-environment interactions significantly influence microbial communities.

bioRxiv · Dec 24, 2025 · PreprintMicrobiology