Author

Vivek Kumar

Cold Spring Harbor LaboratoryORCID 0000-0003-1988-2536Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Vivek Kumar2 papers · Carnegie Mellon University

Biology Disciplines

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Bioinformatics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:genome assembly· 2 Assay:whole-genome sequencing· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Assay:metagenomics· 1

Frequent Co-Authors

Doreen WareiD· 2 shared Aaron A. BestiD· 1 shared Adam P. ArkiniD· 1 shared Annette GreineriD· 1 shared Ben P. Bowen· 1 shared Benjamin H. AlleniD· 1 shared Benjamin Kaufman· 1 shared Brian H. DavisoniD· 1 shared

Activity by Year

2018-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 31 mutual co-author links

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2 shared papersPlant Biology

Doreen WareORCID

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2 papers

Recent·Most cited

Plant BiologybioRxivPreprintFeb 23, 2026

Development and evaluation of a cost-effective, mid-density SNP array as a sorghum community genotyping resource

Vivek Kumar, Robert R. Klein, Benjamin Kaufman…·Doreen Ware

The paper develops and validates a mid-density SNP array for sorghum using NGS, showing it performs as well as high-density GBS for trait prediction and breeding applications.

1 citation

whole-genome sequencingexperimental assay

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BioinformaticsNature BiotechnologyPeer-reviewedJul 1, 2018

✦ In-depth digest

The DOE Systems Biology Knowledgebase (KBase)

Adam P. Arkin, Robert W. Cottingham, Christopher S. Henry…·Dantong Yu

Open-source KBase platform unites reference genomes and biochemistry, over 70 apps, Jupyter-based Narratives with provenance, and a Docker SDK for reproducible plant and microbial systems biology.

1,624 citationstop 1%

multiple speciesbacteria (other)

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