Author

Dennis Psaroudakis

Forschungszentrum JülichORCID 0000-0002-7521-798XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Genetics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:machine learning (classical)· 3 Research Focus:benchmarking· 2 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Organism:plant (other)· 2 Approach:statistical model· 2 Organism:Arabidopsis· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Abhishek GognaiD· 1 shared Alencar XavieriD· 1 shared Andrea BräutigamiD· 1 shared Andrei SlabodkiniD· 1 shared Ankur SahuiD· 1 shared Annan J. Timon· 1 shared Argeo Ulrich· 1 shared Astrid JunkeriD· 1 shared

Activity by Year

2022-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperGenetics

Abhishek GognaORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

BioinformaticsPlant PhenomicsPeer-reviewedOct 11, 2025

panomiX: Investigating Mechanisms Of Trait Emergence Through Multi-Omics Data Integration

Ankur Sahu, Dennis Psaroudakis, Hardy Rolletschek…·Jędrzej Szymański

panomiX integrates multi-omics data to identify molecular interactions and trait-related networks in tomato under heat stress.

5 citations

plant (other)bulk RNA-seq

𝕏 PostBluesky

Plant BiologybioRxivPreprintJul 25, 2025

A sublethal drought and rewatering time course reveals intricate patterning of responses in the annual Arabidopsis thaliana

Elisabeth Fitzek, Dennis Psaroudakis, Bernd Weißhaar…·Andrea Bräutigam

The paper uses phenotyping and transcriptomics to study drought responses in Arabidopsis thaliana, revealing multiple overlapping transcriptional programs that interact with aging.

2 citations

Arabidopsisbulk RNA-seq

𝕏 PostBluesky

GeneticsGeneticsPeer-reviewedNov 22, 2024

Global Genotype by Environment Prediction Competition Reveals That Diverse Modeling Strategies Can Deliver Satisfactory Maize Yield Estimates

Jacob D. Washburn, José Ignacio Varela, Alencar Xavier…·Natalia de León

The paper reports on a competition to predict maize yield using genetic and environmental data, showing that diverse modeling approaches can achieve good results.

30 citationstop 2%

GWAS summary statisticsmachine learning (classical)

𝕏 PostBluesky

BioinformaticsGigaSciencePeer-reviewedJan 1, 2022

Standardized genome-wide function prediction enables comparative functional genomics: a new application area for Gene Ontologies in plants

Leila Fattel, Dennis Psaroudakis, Colleen F. Yanarella…·Carolyn J. Lawrence‐Dill

The paper uses GOMAP to annotate gene functions across 18 crop plant genomes, showing that these annotations can recover known phylogenetic relationships, supporting comparative functional genomics.

9 citations

plant (other)DNA methylation

𝕏 PostBluesky