Trevor J. Krabbenhoft

A genomic tool to tackle cryptic diversity demonstrates the potential for off-target use of GT-seq panels

The paper develops a GT-seq panel to identify species in the Coregonus artedi complex and demonstrates its cross-amplification in related taxa.

Microsynteny Analysis Clarifies the Early Diversification of Cypriniform Fishes

This paper uses microsynteny analysis to resolve deep phylogenetic relationships in Cypriniform fishes, showing it outperforms sequence-based methods in resolving contentious nodes.

Genomic Structural Variation Rescues a Classic Biological Invader from a Population Bottleneck

The paper shows genomic structural variants rescue the brown treesnake population from inbreeding after a severe bottleneck.

A Lake Charr Pangenome Reveals Highly Conserved Ohnologs as Drivers of Phenotypic Diversity

The paper analyzes Lake Charr pangenome data to show conserved Ohnologs can drive adaptive evolution through structural variants and translocations.

The genome of the vining fern Lygodium microphyllum highlights genomic and functional differences between life phases of an invasive plant

This study provides a genome and epigenomic analysis of the invasive fern Lygodium microphyllum, revealing differences between its gametophyte and sporophyte life phases and their responses to freezing stress.

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

The paper analyzes the genome and population genomics of Coffea arabica to reveal its diversification history and breeding-related genetic changes.

Analytical considerations for comparative transcriptomics of wild organisms.

This paper discusses challenges and solutions for comparative transcriptomics in wild organisms, focusing on data handling, annotation, and analysis of genome-environment interactions across species.