Author

Romain Guyot

Centre de Coopération Internationale en Recherche Agronomique pour le DéveloppementORCID 0000-0002-7016-7485Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 3 Bioinformatics· 1 Ecology· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Organism:plant (other)· 5 Approach:experimental assay· 4 Assay:whole-genome sequencing· 4 Research Focus:gene regulatory network inference· 3 Approach:statistical model· 3 Research Focus:benchmarking· 2 Approach:benchmark study· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Simón Orozco-AriasiD· 3 shared Alexandre Rossi PaschoaliD· 2 shared Aditi Rambani· 1 shared Alan Delon AndradeiD· 1 shared Alexandre de KochkoiD· 1 shared Alexandre SorianoiD· 1 shared Aline CharpagneiD· 1 shared André MarquesiD· 1 shared

Activity by Year

2020-2026 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersGenomics

Simón Orozco-AriasORCID

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Author profile →

6 papers

Recent·Most cited

PanTEon: a cross-kingdom framework to guide the design of transposable element classifiers

Simón Orozco-Arias, Iamil Ferrer-Pomer, Fabiana Rodrigues de Góes, Simon Gaviria-Orrego, Juan Gómiz-Fernández, Jordi Llatser Torres, Alexandre Rossi Paschoal, Romain Guyot, Toni Gabaldón

PanTEon provides a cross-kingdom framework for reproducible TE classification, benchmarking machine learning methods and highlighting performance variations across TE superfamilies and lineages.

bioRxiv · Oct 13, 2026 · PreprintBioinformatics

Genomic insights into sex-linked regions and dioecy in the ivory palm (Phytelephas aequatorialis)

Perla Farhat, Julie Orjuela, Hugo Tessarotto, Jos Käfer, Thierry Beulé, Galilea Orellana-Vera, Romain Guyot, Rommel Montúfar, Frédérique Aberlenc‐Bertossi

This study identifies an XY sex chromosome system and sex-linked genes in the ivory palm, suggesting an independent evolutionary pathway for dioecy in palms.

bioRxiv · Sep 18, 2026 · PreprintPlant Biology

Architectural singularities in wild Coffea (Baracoffea) species: integrated morphological perspectives for climate-resilient coffee cultivation

Rickarlos Bezandry, Hery Lisy Tiana Ranarijaona, Marie Elodie Vavitsara, Sylvie Annabel Sabatier, Romain Guyot, Artémis Anest

The paper identifies unique architectural traits in wild Baracoffea coffee species from Madagascar that may aid in breeding climate-resilient coffee varieties.

Plant Ecology & Diversity · Mar 4, 2026Peer-reviewedEcology

The genome and population genomics of allopolyploid Coffea arabica reveal the diversification history of modern coffee cultivars

Jarkko Salojärvi, Aditi Rambani, Zhe Yu, Romain Guyot, Susan R. Strickler, Maud Lepelley, Cui Wang, Sitaram Rajaraman, Pasi M. A. Rastas, Chunfang Zheng, Daniella Santos MuĂąoz, João Meidânis, Alexandre Rossi Paschoal, Yves Bawin, Trevor J. Krabbenhoft, , Patrick Descombes

The paper analyzes the genome and population genomics of Coffea arabica to reveal its diversification history and breeding-related genetic changes.

bioRxiv · Sep 6, 2023 · PreprintGenomics

High nucleotide similarity of three Copia lineage LTR retrotransposons among plant genomes

Simón Orozco-Arias, Mathilde Dupeyron, David Gutiérrez-Duque, Reinel Tabares-Soto, Romain Guyot

The paper identifies three Copia lineage LTR retrotransposons with high similarity across 69 plant genomes, suggesting potential horizontal transfer.

Genome · Jan 9, 2023Peer-reviewedGenomics

Genome sequence of the cluster root forming white lupin

Bárbara Hufnagel, André Marques, Alexandre Soriano, L. Pons Marqués, Fanchon Divol, Patrick Doumas, Erika Sallet, Davide Mancinotti, Sébastien Carrère, William Marande, Sandrine Arribat, Jean Keller, Cécile Huneau, Thomas Blein, Delphine Aimé, , Benjamin Péret

The paper provides a high-quality genome sequence of white lupin and identifies a transcription factor regulating cluster root formation.

Nature Communications · Jan 24, 2020Peer-reviewedGenomics