Author

Matthew R. Dillon

Northern Arizona UniversityORCID 0000-0002-7713-1952Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:metagenomics· 3 Research Focus:benchmarking· 1 Research Focus:database / resource· 1 Approach:experimental assay· 1 Approach:machine learning (classical)· 1 Research Focus:software / tool· 1 Approach:statistical model· 1

Frequent Co-Authors

Nicholas A. BokulichiD· 3 shared Benjamin D. KaehleriD· 2 shared Evan K BolyeniD· 2 shared J. Gregory CaporasoiD· 2 shared Devon R. O’RourkeiD· 1 shared Gavin A. HuttleyiD· 1 shared Huilin LiiD· 1 shared Jai Ram RideoutiD· 1 shared

Activity by Year

2017-2021 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 26 mutual co-author links

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3 shared papersBioinformatics

Nicholas A. BokulichORCID

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3 papers

Recent·Most cited

RESCRIPt: Reproducible sequence taxonomy reference database management for the masses

Michael Scott Robeson, Devon R. O’Rourke, Benjamin D. Kaehler, Michał Ziemski, Matthew R. Dillon, Jeffrey T. Foster, Nicholas A. Bokulich

The paper introduces RESCRIPt, a software tool for reproducibly generating and managing nucleotide sequence taxonomy databases, showing that larger databases are not always better and highlighting the benefits of curation.

PLoS Computational Biology · Nov 8, 2021Peer-reviewedBioinformatics

q2-sample-classifier: machine-learning tools for microbiome classification and regression

Nicholas A. Bokulich, Matthew R. Dillon, Evan K Bolyen, Benjamin D. Kaehler, Gavin A. Huttley, J. Gregory Caporaso

The paper benchmarks supervised learning methods for microbiome classification and regression, introducing a QIIME 2 plugin to apply these methods to microbiome data.

The Journal of Open Source Software · Oct 23, 2018Peer-reviewedBioinformatics

q2-longitudinal: a QIIME 2 plugin for longitudinal and paired-sample analyses of microbiome data

Nicholas A. Bokulich, Yilong Zhang, Matthew R. Dillon, Jai Ram Rideout, Evan K Bolyen, Huilin Li, Paul S. Albert, J. Gregory Caporaso

The paper introduces q2-longitudinal, a QIIME 2 plugin for analyzing longitudinal and paired microbiome data, offering methods like linear mixed effects models and volatility analysis.

bioRxiv · Nov 22, 2017 · PreprintBioinformatics