J. Gregory Caporaso

This study shows that Bacteroides fragilis treatment in AD mice alters gut microbiota, reduces neuroinflammation markers, and normalizes brain metabolites.

The paper proposes a roadmap for fair reuse of public microbiome data by introducing a Data Reuse Information tag (DRI) to facilitate communication between data creators and consumers.

MOSHPIT provides a reproducible metagenome analysis tool built on QIIME 2, integrating validated tools and interfaces for scalable and accessible data science.

This study links a soil microbiome from a suspect's sock to a crime scene location, showing potential for forensic use.

This paper shows that incorporating species abundance data improves taxonomy classification accuracy for amplicon sequences.

The paper benchmarks supervised learning methods for microbiome classification and regression, introducing a QIIME 2 plugin to apply these methods to microbiome data.

This paper investigates whether UDCA's effects on the gut microbiome influence colorectal adenoma risk and finds no association between UDCA-induced microbiome changes and adenoma risk.

The paper introduces q2-longitudinal, a QIIME 2 plugin for analyzing longitudinal and paired microbiome data, offering methods like linear mixed effects models and volatility analysis.