Michael Scott Robeson

MOSHPIT provides a reproducible metagenome analysis tool built on QIIME 2, integrating validated tools and interfaces for scalable and accessible data science.

GRUMPS cleans genomic datasets by identifying and removing low-quality and misidentified genomes, enabling accurate analysis of bacterial population structures.

The paper presents a proteogenomic approach to identify resistance-specific alterations in melanoma PDX models treated with MAPK inhibitors using custom curated databases.

The paper introduces RESCRIPt, a software tool for reproducibly generating and managing nucleotide sequence taxonomy databases, showing that larger databases are not always better and highlighting the benefits of curation.

This paper compares methods for scaffolding multiple regions of the 16S rRNA gene to improve taxonomic resolution, finding that Sidle provides the least bias and most precise species-level resolution.

This study analyzes over 100,000 E. coli genomes to identify 14 phylogroups, revealing population structure and genomic adaptations in virulence and antibiotic resistance.