Author

Shaokui Wang

South China Agricultural UniversityORCID 0000-0002-7767-4033Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Research Focus:database / resource· 2 Organism:plant (other)· 2 Assay:whole-genome sequencing· 2 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Approach:large language model· 1 Research Focus:software / tool· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Fangping LiiD· 2 shared Haifei HuiD· 2 shared Jieying LiuiD· 2 shared Bi CheniD· 1 shared Binyu ShuaiiD· 1 shared Deshu Zhao· 1 shared Guodong CheniD· 1 shared Hongyuan ZhaoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 35 mutual co-author links

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2 shared papersBioinformatics

Fangping LiORCID

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2 papers

Recent·Most cited

DeepPGDB: A Novel Paradigm for AI-Guided Interactive Plant Genomic Database

Fangping Li, Jiaxuan Chen, Wei Luo, Jieying Liu, Guodong Chen, Binyu Shuai, Zhuangwei Hou, Zhenpeng Gan, Hongyuan Zhao, Penglin Zhan, Bi Chen, Zefu Wang, Haifei Hu, Shaokui Wang

DeepPGDB provides an AI-driven plant genomics database with natural language interfaces for multi-omics data access and analysis, enhancing usability and accelerating research in agriculture and biotechnology.

Plant Communications · Sep 8, 2025Peer-reviewedBioinformatics

Visualization and review of reads alignment on the graphical pan-genome with VAG

Fangping Li, Haifei Hu, Zitong Xiao, Jingming Wang, Jieying Liu, Deshu Zhao, Yu Fu, Yijun Wang, Xue Yuan, Suhong Bu, Xiaofan Zhou, Junliang Zhao, Shaokui Wang

The paper introduces VAG, a tool for visualizing and analyzing read alignments on graph pangenomes, and demonstrates its application in identifying genetic variations in rice and other species.

bioRxiv · Jan 20, 2023 · PreprintBioinformatics