Haifei Hu

This paper reports the genome sequencing and analysis of Citrus changshan-huyou, revealing its origin from ancient hybridization between mandarin and pummelo and identifying tissue-specific allelic imbalance.

The paper presents a pangenome and pantranscriptome of hexaploid oat, describing gene expression diversity and structural genome variation across 33 accessions and six tissues.

DeepPGDB provides an AI-driven plant genomics database with natural language interfaces for multi-omics data access and analysis, enhancing usability and accelerating research in agriculture and biotechnology.

This study presents a barley pangenome revealing structural variation linked to traits like disease resistance and plant architecture, highlighting its role in adaptive evolution.

The paper constructs the first pear pangenome and identifies genetic variations associated with fruit quality differences between Asian and European pears.

The paper constructs a duck pan-genome and identifies transposon-derived structural variations linked to bodyweight and white plumage traits in ducks.

The paper introduces a pangenome analysis pipeline (PSVCP) for rice that improves functional gene identification by capturing structural variations and provides insights into genomic diversity and trait associations.

The paper introduces VAG, a tool for visualizing and analyzing read alignments on graph pangenomes, and demonstrates its application in identifying genetic variations in rice and other species.