Emily E.F. Fekete

This study uses metaproteomics to analyze how culture medium and donor-specific factors influence the establishment of in vitro fecal microbial communities over time.

This study uses metaproteomics to identify age-specific changes in the gut microbiome of SARS-CoV-2-infected hamsters, revealing functional alterations and host-microbiome interactions.

This study evaluates how different experimental workflows affect fecal metaproteomic results, showing that DIA-PASEF improves protein identification and small protein recovery compared to DDA.

This study uses multi-omic profiling to analyze Caco-2 cell differentiation, showing similar protein and pathway changes in spontaneous and medium-induced differentiation, with butyrate accelerating differentiation and altering protein expression related to host-microbiome interactions.

This study introduces a streamlined TMT labeling method using pre-aliquoted dry reagents, improving efficiency and reducing variability in proteomic and metaproteomic analyses.