Author

Carlos J. Pardo‐De la Hoz

Duke UniversityORCID 0000-0002-7898-0948Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Research Focus:host-pathogen & immune response· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Bart P. H. J. ThommaiD· 1 shared Benjamin R. WucheriD· 1 shared Björn UsadeliD· 1 shared Ciaran KellyiD· 1 shared Diego Federico KauneiD· 1 shared Diego Garfias-GallegosiD· 1 shared Dirk Joisten· 1 shared Florian AltegoeriD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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1 shared paperGenomics

Bart P. H. J. ThommaORCID

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2 papers

Recent·Most cited

GenomicsbioRxivPreprintJun 20, 2026

A chromosome-scale super-pangenome of the lichen genus Peltigera reveals genome architecture and expanded interaction repertoires shared across pathogenic and mutualistic fungi

Vivien Joisten-Rosenthal, Tolga Arslan, Max Heinen…·Björn Usadel

The paper constructs a chromosome-scale super-pangenome for the lichen genus Peltigera, revealing shared genomic features between pathogenic and mutualistic fungi.

DOI 10.64898/2026.06.16.732702

DNA methylationwhole-genome sequencing

𝕏 PostBluesky

MicrobiologybioRxivPreprintApr 21, 2026

Metabiosis underlies a microbiota permissive to Pseudomonadota and increases the risk of gut-borne bloodstream infection

Benjamin R. Wucher, Carlos J. Pardo‐De la Hoz, Issac Stamper…·João B. Xavier

The paper identifies metabiosis, an ecological dependency where Bacteroides supports Pseudomonadota growth, increasing gut-borne bloodstream infection risk in allo-HCT patients.

DOI 10.64898/2026.04.20.716137

humanmetagenomics

𝕏 PostBluesky