Author

Johan Nyström-Persson

ORCID 0000-0002-7951-4762Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Approach:experimental assay· 2 Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:gene regulatory network inference· 1 Research Focus:genome assembly· 1 Research Focus:variant calling· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Gabriel Keeble‐GagnèreiD· 2 shared Abraham KoroliD· 1 shared Adam M. DimechiD· 1 shared Andrew G. Sharpe· 1 shared Angéla JuhásziD· 1 shared Aurélien BernardiD· 1 shared Benoît DarrieriD· 1 shared Bevan Emma HuangiD· 1 shared

Activity by Year

2018-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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2 shared papersBioinformatics

Gabriel Keeble‐GagnèreORCID

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3 papers

Recent·Most cited

GenomicsNAR Genomics and BioinformaticsPeer-reviewedMar 29, 2025

Precise and scalable metagenomic profiling with sample-tailored minimizer libraries

Johan Nyström-Persson, Nishad Bapatdhar, Samik Ghosh

The paper introduces a two-step metagenomic classification method that improves precision and scalability using sample-tailored minimizer libraries, achieving higher species-level read classification.

3 citations

metagenomicsstatistical model

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BioinformaticsBioinformaticsPeer-reviewedMar 3, 2021

Compact and evenly distributed k-mer binning for genomic sequences

Johan Nyström-Persson, Gabriel Keeble‐Gagnère, Niamat Zawad

The paper introduces a new k-mer binning method called universal frequency ordering, which improves efficiency in distributed k-mer counting for metagenomics.

18 citations

metagenomicsstatistical model

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GenomicsGenome biologyPeer-reviewedAug 14, 2018

Optical and physical mapping with local finishing enables megabase-scale resolution of agronomically important regions in the wheat genome

Gabriel Keeble‐Gagnère, Philippe Rigault, Josquin F. G. Tibbits…·R. Appels

84 citationstop 1%

whole-genome sequencingexperimental assay

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