Author

Vincent P. Reuter

University of VirginiaORCID 0000-0002-7967-976XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 2 Cell Biology· 1 Genomics· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Research Focus:benchmarking· 1 Research Focus:chromatin & epigenetic regulation· 1 Research Focus:database / resource· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Nathan C. SheffieldiD· 3 shared Jason P. SmithiD· 2 shared Michał StolarczykiD· 2 shared André F. RendeiroiD· 1 shared Christoph C. H. LangeriD· 1 shared Daniel W. GerlichiD· 1 shared Dmitry Evgenevich MylarshchikoviD· 1 shared Federico TeloniiD· 1 shared

Activity by Year

2020-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

3 shared papersBioinformatics

Nathan C. SheffieldORCID

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

Cohesin guides homology search during DNA repairvia loops and sister chromatid linkages

Federico Teloni, Zsuzsanna Takács, Michael Mitter, Christoph C. H. Langer, Inès Prlesi, Thomas L. Steinacker, Vincent P. Reuter, Dmitry Evgenevich Mylarshchikov, Daniel W. Gerlich

This study reveals how cohesin facilitates homology search during DNA repair by reshaping chromosome architecture through two distinct cohesin pools.

bioRxiv · Feb 10, 2025 · PreprintCell Biology

Linking big biomedical datasets to modular analysis with Portable Encapsulated Projects

Nathan C. Sheffield, Michał Stolarczyk, Vincent P. Reuter, André F. Rendeiro

The paper introduces PEP, a metadata standard for biological projects, to improve data portability and tool compatibility across bioinformatics workflows.

GigaScience · Dec 1, 2021Peer-reviewedBioinformatics

PEPATAC: An optimized pipeline for ATAC-seq data analysis with serial alignments

Jason P. Smith, M. Ryan Corces, Jin Xu, Vincent P. Reuter, Howard Y. Chang, Nathan C. Sheffield

PEPATAC is an ATAC-seq analysis pipeline that improves speed and accuracy through serial mitochondrial genome alignment, providing standardized outputs for downstream analysis.

NAR Genomics and Bioinformatics · Oct 4, 2021Peer-reviewedGenomics

Refgenie: a reference genome resource manager

Michał Stolarczyk, Vincent P. Reuter, Jason P. Smith, Neal E. Magee, Nathan C. Sheffield

Refgenie organizes and shares reference genome resources, making it easier to manage and retrieve genome analysis files.

GigaScience · Jan 29, 2020Peer-reviewedBioinformatics