Author

Sean Michael Kearney

Massachusetts Institute of TechnologyORCID 0000-0002-8033-8380Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Genomics· 1 Microbiology· 1 Systems Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Assay:metagenomics· 2 Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Research Focus:ecology & biodiversity· 1

Frequent Co-Authors

Allison CoeiD· 1 shared Anna C. H. HogeiD· 1 shared Carlo RattiiD· 1 shared Christian DieneriD· 1 shared Claire DuvalletiD· 1 shared Elizabeth B. KujawinskiiD· 1 shared Eric J. AlmiD· 1 shared Ilana BritoiD· 1 shared

Activity by Year

2019-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

1 shared paperMicrobiology

Allison CoeORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

MicrobiologymSystemsPeer-reviewedJul 20, 2026

Influence of heterotrophs on phage infection of marine picocyanobacteria

Allison Coe, Sierra M. Parker, Nhi N Vo…·Sallie W. Chisholm

This study investigates how heterotrophic bacteria affect phage infection of Prochlorococcus and Synechococcus, finding that heterotrophs enable host recovery and confer resistance through non-genetic metabolic changes.

DOI 10.1128/msystems.00769-26

metagenomicsexperimental assay

Systems BiologyCommunications BiologyPeer-reviewedMar 9, 2021

Non-responder phenotype reveals microbiome-wide antibiotic resistance in the murine gut

Christian Diener, Anna C. H. Hoge, Sean Michael Kearney…·Sean M. Gibbons

The paper identifies a non-responder phenotype in the murine gut microbiome that exhibits resistance to cefoperazone, showing upregulated antimicrobial resistance genes and reduced central metabolism during antibiotic treatment.

6 citations

mousebulk RNA-seq

GenomicsbioRxivPreprintSep 3, 2019

24-hour multi-omics analysis of residential sewage reflects human activity and informs public health

Mariana G. Matus, Claire Duvallet, Melissa C. Kido Soule…·Eric J. Alm

This study analyzes 24-hour residential sewage using untargeted genomics and metabolomics to identify human-derived biomarkers and inform public health.

17 citations

humanmetagenomics