Author

Lili Liu

Chinese Academy of SciencesORCID 0000-0002-8073-8309Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 1 Approach:deep learning· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:protein sequence· 1 Research Focus:sequence-to-function modeling· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Allen R. BuskirkiD· 1 shared Bin ShaoiD· 1 shared Bo CaoiD· 1 shared Chen GuiD· 1 shared Delin YouiD· 1 shared Hang WuiD· 1 shared Jiawei YaniD· 1 shared Jieliang Zhou· 1 shared

Activity by Year

2020-2024 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Allen R. BuskirkORCID

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2 papers

Recent·Most cited

BioinformaticsNature CommunicationsPeer-reviewedMar 5, 2024

Riboformer: A Deep Learning Framework for Predicting Context-Dependent Translation Dynamics

Bin Shao, Jiawei Yan, Jing Zhang…·Allen R. Buskirk

Riboformer predicts context-dependent translation dynamics using deep learning, correcting artifacts and identifying sequence motifs affecting ribosome stalling.

18 citations

protein sequencedeep learning

𝕏 PostBluesky

Molecular BiologyNucleic Acids ResearchPeer-reviewedMay 23, 2020

Nick-seq for single-nucleotide resolution genomic maps of DNA modifications and damage

Bo Cao, Xiaolin Wu, Jieliang Zhou…·Peter C. Dedon

The paper introduces Nick-seq, a method for single-nucleotide resolution mapping of DNA modifications and damage, demonstrating its application to single-strand-breaks, phosphorothioate modifications, and DNA oxidation.

67 citations

DNA methylationexperimental assay

𝕏 PostBluesky