Author

Li Chen

University of MinnesotaORCID 0000-0002-8200-7681Unclaimed ORCID profile · follow to get notified of new preprints

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Li Chen14 papers · Northwestern University

Biology Disciplines

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Bioinformatics· 2 Genetic & Genomic Medicine· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Approach:statistical model· 2 Assay:ATAC-seq· 1 Approach:contrastive learning· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:graph neural network· 1

Frequent Co-Authors

Changman LiiD· 1 shared Chunhong Cheng· 1 shared Chunlin LiiD· 1 shared Guojian CheniD· 1 shared Han LiiD· 1 shared Haoteng Gu· 1 shared Hongtao YuiD· 1 shared James S. PankowiD· 1 shared

Activity by Year

2021-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 14 mutual co-author links

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1 shared paperBioinformatics

Changman LiORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 21, 2025

STARNet enables spatially resolved inference of gene regulatory networks from spatial multi-omics data

Lei Hu, Shichen Zhang, Xuting Zhang…·Jianyang Zeng

STARNet infers gene regulatory networks from spatial multi-omics data, revealing domain-specific regulatory interactions in tissues.

3 citations

𝕏 PostBluesky

Genetic & Genomic MedicinemedRxivPreprintJan 30, 2025

Measuring weak effects in high dimensional mediation analysis

Chunlin Li, Li Chen, James S. Pankow, Tianzhong Yang

This paper introduces two new variance-based causal measures and a mixed-effects estimation procedure to accurately quantify weak mediation effects in high-dimensional omics data.

1 citation

statistical model

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BioinformaticsbioRxivPreprintSep 14, 2021

Genome-wide identification and gene expression analysis of clade A protein phosphatase 2C family genes in Brassica juncea var. tumida

Chunhong Cheng, Zhaoming Cai, Rongbin Su…·Changman Li

This study identifies and analyzes the expression of clade A PP2C genes in Brassica juncea var. tumida under various stress conditions and developmental stages.

1 citation

plant (other)DNA methylation

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