Author

Alexis Criscuolo

Institut PasteurORCID 0000-0002-8212-5215Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:whole-genome sequencing· 3 Research Focus:genome assembly· 2 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Research Focus:variant calling· 2 Organism:bacteria (other)· 1 Organism:C. elegans· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

Sylvain BrisseiD· 3 shared Virginie Passet· 3 shared Chiara CrestaniiD· 2 shared Martin Rethoret-PastyiD· 2 shared Audrey Combary· 1 shared Brice Raffestin· 1 shared Bryan BrancotteiD· 1 shared Carla RodriguesiD· 1 shared

Activity by Year

2016-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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3 shared papersMicrobiology

Sylvain BrisseORCID

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3 papers

Recent·Most cited

MicrobiologyPLoS BiologyPeer-reviewedJun 4, 2026

Life Identification Numbers: A bacterial strain nomenclature approach

Féderica Palma, Mélanie Hennart, Keith A. Jolley…·Sylvain Brisse

The paper proposes the Life Identification Number (LIN) system as a stable, multilevel strain taxonomy for bacterial pathogens based on core genome MLST to improve epidemiological tracking and nomenclature consistency.

19 citationstop 1%

bacteria (other)whole-genome sequencing

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MicrobiologyNature CommunicationsPeer-reviewedMay 24, 2025

Genomic Epidemiology and Microevolution of the Zoonotic Pathogen Corynebacterium ulcerans

Chiara Crestani, Virginie Passet, Martin Rethoret-Pasty…·Sylvain Brisse

This study develops a cgMLST scheme for high-resolution genotyping of C. ulcerans and identifies genetic clusters linked to transmission and geographical spread.

17 citationstop 1%

C. eleganswhole-genome sequencing

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MicrobiologyScientific ReportsPeer-reviewedJul 27, 2016

Genomic epidemiology and global diversity of the emerging bacterial pathogen Elizabethkingia anophelis

Sebastien Breurec, Alexis Criscuolo, Laure Diancourt…·Sylvain Brisse

This paper analyzes the genomic diversity and epidemiology of Elizabethkingia anophelis using whole-genome sequencing, revealing sublineages, antimicrobial resistance genes, and CRISPR-based strain subtyping tools.

DOI 10.1038/srep30379

humanwhole-genome sequencing

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