Martin Rethoret-Pasty

This paper introduces a cumulative cgMLST approach to improve discrimination of nested phylogenetic groups by adding conserved loci, showing increased allelic distances and utility for epidemiological analysis.

The paper proposes the Life Identification Number (LIN) system as a stable, multilevel strain taxonomy for bacterial pathogens based on core genome MLST to improve epidemiological tracking and nomenclature consistency.

This study maps metabolic diversity in Klebsiella pneumoniae sub-lineages using genomics and metabolic modeling, revealing lineage-specific metabolic profiles that support coexistence through cross-feeding.

This paper introduces a hierarchical genomic taxonomy system for Corynebacterium diphtheriae using cgMLST-based Life Identification Number (LIN) codes to classify strains at multiple levels of resolution.

This study evaluates ONT R10.4.1 long-read sequencing for accurate genotyping of three respiratory pathogens, showing error rates below 1% for cgMLST.

This study develops a cgMLST scheme for high-resolution genotyping of C. ulcerans and identifies genetic clusters linked to transmission and geographical spread.