Author

Paula Díaz

Instituto Nacional de SaludORCID 0000-0002-8252-5622Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:bacteria (other)· 2 Research Focus:phylogenetics / evolution· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Approach:deep learning· 1 Organism:human· 1

Frequent Co-Authors

Alexander V. PredeusiD· 1 shared Angeline Montaño· 1 shared Anthony Marius SmithiD· 1 shared Arti KapiliD· 1 shared Assaf RokneyiD· 1 shared Ayorinde O. AfolayaniD· 1 shared Benjamin P. HowdeniD· 1 shared Blanca M. Perez-SepulvedaiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 20 mutual co-author links

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1 shared paperGenomics

Alexander V. PredeusORCID

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2 papers

Recent·Most cited

Typhi Mykrobe: fast and accurate lineage identification and antimicrobial resistance genotyping directly from sequence reads for the typhoid fever agent Salmonella Typhi

Danielle J. Ingle, Jane Hawkey, Martin Hunt, Zamin Iqbal, Jacqueline A. Keane, Ayorinde O. Afolayan, Niyaz Ahmed, Saadia Andleeb, Philip Ashton, Isaac I. Bogoch, Megan E. Carey, Marie Anne Chattaway, John A. Crump, Paula Díaz, Benjamin P. Howden, , Kathryn E. Holt

Mykrobe k-mer panel genotypes Salmonella Typhi lineages, antimicrobial resistance (AMR) markers and plasmids from Illumina or nanopore reads, matching mapping-based lineage calls for 99.8% of genomes.

Genome Medicine · Oct 24, 2025Peer-reviewedMicrobiology✦ In-depth digest

Genomic and phylogenetic analysis of Salmonella Typhimurium and its monophasic variants responsible for invasive endemic infections in Colombia

Yan Li, Caisey V. Pulford, Paula Díaz, Blanca M. Perez-Sepulveda, Carolina Duarte, Alexander V. Predeus, Magdalena Wiesner, Darren Heavens, Ross S. Low, Christian Schudoma, James Lipscombe, Angeline Montaño, Neil Hall, Jaime Moreno, Jay C. D. Hinton

The paper analyzes genomic and phylogenetic data of Salmonella Typhimurium and monophasic variants from Colombia to understand their population structure, evolution, and antibiotic resistance.

bioRxiv · Mar 25, 2019 · PreprintGenomics