Author

Shoba Ranganathan

Macquarie UniversityORCID 0000-0002-8290-813XUnclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Research Focus:benchmarking· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Approach:benchmark study· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Approach:statistical model· 1

Frequent Co-Authors

Dean SouthwoodiD· 2 shared John Graham OakeshottiD· 2 shared Rahul RaneiD· 2 shared Siu Fai LeeiD· 2 shared

Activity by Year

2023-2023 · peak 2/yr

Co-Author Collaboration Network

4 top collaborators · 6 mutual co-author links

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2 shared papersBioinformatics

Dean SouthwoodORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintApr 18, 2023

Pyro: A Comprehensive Pipeline for Eukaryotic Genome Assembly

Dean Southwood, Rahul Rane, Siu Fai Lee…·Shoba Ranganathan

Pyro provides a comprehensive pipeline for eukaryotic genome assembly, offering multiple assembly and polishing approaches across different sequencing technologies.

2 citations

Arabidopsiswhole-genome sequencing

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BioinformaticsbioRxivPreprintApr 18, 2023

Exhaustive benchmarking of de novo assembly methods for eukaryotic genomes

Dean Southwood, Rahul Rane, Siu Fai Lee…·Shoba Ranganathan

This study benchmarks 28 de novo assembly tools for eukaryotic genomes using Illumina, Oxford Nanopore, and PacBio data, evaluating contiguity, performance, and gene completeness across coverage levels.

1 citation

whole-genome sequencingbenchmark study

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