Clément Birbes

Comprehensive detection of structural variations in long and short reads dataset of French cattle

The paper detects structural variants in French cattle using long and short-read data, identifying 25,191 deletions and 30,118 insertions across 14 breeds.

Application of a French cattle pangenome, from structural variant discovery to association studies on key phenotypes

The paper constructs a bovine pangenome using long-read sequencing and identifies structural variants associated with key phenotypes in French cattle breeds.

Benchmarking long-read genome assemblers for three sequencing protocols and three agricultural species

This study benchmarks long-read genome assemblers across three agricultural species and three sequencing protocols to evaluate their performance and provide insights into optimal tool and technology combinations.

Massive detection of cryptic recessive genetic defects in cattle mining millions of life histories

The paper detects recessive genetic defects in cattle using genomic data and life history analysis, identifying 33 new loci linked to juvenile mortality.