Carole Iampietro

Goat genome assemblies, nine breeds for pangenome contribution

The paper presents high-quality genome assemblies for nine goat breeds using long-read sequencing, contributing to pangenome construction and structural variant analysis.

New chromosome-level haplotyped genome assemblies and annotation for the Japanese Quail (Coturnix Japonica)

The paper presents new chromosome-level haplotyped genome assemblies for the Japanese quail, improving contiguity and completeness compared to previous references.

Assembly of a pangenome uncovers novel non-reference unique insertion sequences in cattle highlighting their genetic diversity

The paper constructs a cattle pangenome to identify novel non-reference unique insertions (NRUIs) and links them to economically important traits.

An extensive and unbiased genome-wide scan for parent-of-origin expressed genes in the pig clarifies the conservation landscape of genomic imprinting

The paper identifies 440 parent-of-origin expressed genes in pigs, revealing weak conservation of genomic imprinting across species and tissues.

T2T genome of the basal nematode Xiphinema index reveals major adaptive events associated with plant parasitism and epigenetic regulation

The paper presents the telomere-to-telomere genome of Xiphinema index, revealing HGTs related to plant parasitism and an unprecedented epigenetic toolkit in nematodes.

An annotated chromosome-level genome assembly ofthe Adzuki bean borer Ostrinia scapulalis (Lepidoptera: Crambidae)

The paper presents a chromosome-level genome assembly for Ostrinia scapulalis, improving upon previous fragmented assemblies and enabling better comparative genomic studies.

Adaptive challenges of past and future invasion of Drosophila suzukii: insights from novel genomic resources and statistical methods combining individual and pool sequencing data

This study uses genomic data and statistical methods to analyze adaptation in Drosophila suzukii during past and future invasions, identifying genomic regions associated with invasion success and predicting future invasion risks.

Gain and loss of gene function shaped the nickel hyperaccumulation trait in Noccaea caerulescens

This study identifies genetic changes in Noccaea caerulescens that correlate with nickel hyperaccumulation, showing that NcIRT1 mutations can cause loss of the trait.

Comprehensive detection of structural variations in long and short reads dataset of French cattle

The paper detects structural variants in French cattle using long and short-read data, identifying 25,191 deletions and 30,118 insertions across 14 breeds.

Draft genome and transcriptomic sequence data of three invasive insect species

This paper provides genome and transcriptomic sequences of three invasive insect species, offering resources for population genomics and pest management.

Application of a French cattle pangenome, from structural variant discovery to association studies on key phenotypes

The paper constructs a bovine pangenome using long-read sequencing and identifies structural variants associated with key phenotypes in French cattle breeds.

Benchmarking long-read genome assemblers for three sequencing protocols and three agricultural species

This study benchmarks long-read genome assemblers across three agricultural species and three sequencing protocols to evaluate their performance and provide insights into optimal tool and technology combinations.

metagWGS, a comprehensive workflow to analyze metagenomic data using Illumina or PacBio HiFi reads

metagWGS is a workflow for metagenomic analysis using short or long reads, producing high-quality genome bins and comprehensive annotations.

Multi-genome comparisons reveal gain-and-loss evolution of the anti-Mullerian hormone receptor type 2 gene, an old master sex determining gene, in Percidae

The paper compares genomes across multiple fish species to study the evolutionary changes in the amhr2bY gene, a key sex-determining gene, revealing gains and losses in different Percidae species.

Massive detection of cryptic recessive genetic defects in cattle mining millions of life histories

The paper detects recessive genetic defects in cattle using genomic data and life history analysis, identifying 33 new loci linked to juvenile mortality.

An ancient truncated duplication of the anti-Mullerian hormone receptor type 2 gene is a potential conserved master sex determinant in the Pangasiidae catfish family

The paper identifies a truncated duplication of the amhr2 gene on the Y chromosome in Pangasiid catfishes as a conserved master sex-determining gene.