Christine Gaspin

The paper presents high-quality genome assemblies for nine goat breeds using long-read sequencing, contributing to pangenome construction and structural variant analysis.

This study shows that 2'-O-Me modifications on rRNA are dynamically regulated during seed-to-seedling transition in Arabidopsis and affect ribosome translation.

This study identifies the molecular mechanism of insertion-driven HPAIV emergence and introduces a predictive tool to identify predisposed HA sequences.

The paper identifies circZBTB46 as a driver of crizotinib resistance in ALK-positive lymphomas and shows its targeting restores drug sensitivity.

Pan1C is a pipeline that builds chromosome-level pangenome graphs, improving alignment and variant calling by integrating multiple strategies and benchmarked across different species.

The paper detects structural variants in French cattle using long and short-read data, identifying 25,191 deletions and 30,118 insertions across 14 breeds.

The paper constructs a bovine pangenome using long-read sequencing and identifies structural variants associated with key phenotypes in French cattle breeds.

This study benchmarks long-read genome assemblers across three agricultural species and three sequencing protocols to evaluate their performance and provide insights into optimal tool and technology combinations.

metagWGS is a workflow for metagenomic analysis using short or long reads, producing high-quality genome bins and comprehensive annotations.

The paper detects recessive genetic defects in cattle using genomic data and life history analysis, identifying 33 new loci linked to juvenile mortality.

srnaMapper is a tool designed to map short RNA-Seq reads efficiently, handling errors and redundancy, and outperforms existing tools on benchmark datasets.