Sofia N. Barreira

T2T-HG002v1.1, a complete diploid HG002 assembly lacking detectable errors over 99.4% of its length, enables genome-based benchmarking of assemblies, sequencing reads, and phased variant calls.

This paper presents a chromosome-level genome assembly for Podocoryna americana, revealing gene family expansions and contractions compared to other cnidarians.

This study characterizes the genome and single-cell transcriptome of Hydractinia, revealing that its stem cells use a conserved gene toolkit shared with all animals.

This study shows that random genomic 6mA accumulation in early Hydractinia embryos delays zygotic transcription initiation by inhibiting gene expression.

The paper presents AniProtDB, a database of high-quality metazoan proteomes generated from NCBI Sequence Read Archive data, enabling comparative genomics studies across 100 species.

BuddySuite provides command-line tools for handling sequence, alignment, and phylogenetic tree files, supporting multiple formats and offering over 100 tools for data manipulation.