Author

Masaaki Furuno

RIKEN Center for Integrative Medical SciencesORCID 0000-0002-8483-2941Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Approach:statistical model· 1

Frequent Co-Authors

Erik ArneriD· 2 shared Harukazu SuzukiiD· 2 shared Satoshi TakizawaiD· 2 shared Takahiro ArakawaiD· 2 shared Akira HasegawaiD· 1 shared Andrew Tae-Jun KwoniD· 1 shared Bogumił KaczkowskiiD· 1 shared Cecilia Lanny WinataiD· 1 shared

Activity by Year

2019-2023 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Erik ArnerORCID

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2 papers

Recent·Most cited

BioinformaticsBMC BioinformaticsPeer-reviewedJan 11, 2023

xcore: an R package for inference of gene expression regulators

Maciej Migdał, Cecilia Lanny Winata, Takahiro Arakawa…·Bogumił Kaczkowski

xcore is an R package that models transcription factor activity using ChIP-seq signatures and gene expression data, demonstrating improved biological relevance in case studies.

1 citation

ChIP-seqstatistical model

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GenomicsNature CommunicationsPeer-reviewedJan 21, 2019

C1 CAGE detects transcription start sites and enhancer activity at single-cell resolution

Tsukasa Kouno, Jonathan Moody, Andrew Tae-Jun Kwon…·Jay W. Shin

C1 CAGE detects transcription start sites and enhancer activity in lung cancer cells, revealing subpopulations with distinct responses to TGF-β and enhancer RNA dynamics.

102 citationstop 3%

humanbulk RNA-seq

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