Author

Fatih Karaoğlanoğlu

Simon Fraser UniversityORCID 0000-0002-8505-9241Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Assay:long-read sequencing· 2 Research Focus:software / tool· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:experimental assay· 1 Research Focus:genome assembly· 1 Organism:human· 1

Frequent Co-Authors

Cédric ChauveiD· 2 shared Baraa OrabiiD· 1 shared Camir RickettsiD· 1 shared Can AlkaniD· 1 shared Ezgi EbreniD· 1 shared Faraz HachiD· 1 shared Iman HajirasoulihaiD· 1 shared Kay C. WieseiD· 1 shared

Activity by Year

2020-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 17 mutual co-author links

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2 shared papersBioinformatics

Cédric ChauveORCID

Mutual co-authors in cluster

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3 papers

Recent·Most cited

Accurate hybrid plasmids assembly with HyPlAs

Fatih Karaoğlanoğlu, Kay C. Wiese, Cédric Chauve

HyPlAs improves plasmid assembly from hybrid sequencing data by classifying short-read contigs as chromosomal or plasmidic, outperforming Plassembler on bacterial samples.

bioRxiv · Aug 21, 2025 · PreprintBioinformatics

TKSM: Highly modular, user-customizable, and scalable transcriptomic sequencing long-read simulator

Fatih Karaoğlanoğlu, Baraa Orabi, Ryan Kendrick Flannigan, Cédric Chauve, Faraz Hach

TKSM simulates transcriptomic long-read sequencing data by modularly combining steps, enabling customizable and scalable benchmarking of sequencing tools.

Bioinformatics · Jan 23, 2024Peer-reviewedBioinformatics

Characterization of segmental duplications and large inversions using Linked-Reads

Fatih Karaoğlanoğlu, Camir Ricketts, Marzieh Eslami Rasekh, Ezgi Ebren, Iman Hajirasouliha, Can Alkan

The paper introduces VALOR2, a new software package that uses Linked-Read sequencing to detect large genomic inversions and characterize interspersed segmental duplications.

Genome biology · Mar 19, 2020Peer-reviewedBioinformatics