Author

Ilya Kolpakov

ORCID 0000-0002-8546-7181Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:differential expression· 1 Assay:scRNA-seq· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Ioannis XénariosiD· 2 shared Anthony Blin· 1 shared Arnaud Charles‐Antoine ZwygartiD· 1 shared Caroline TappareliD· 1 shared Cédric HowaldiD· 1 shared Chiara MedagliaiD· 1 shared Emmanouil T. DermitzakisiD· 1 shared Francesco StellacciiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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2 shared papersBioinformatics

Ioannis XénariosORCID

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2 papers

Recent·Most cited

Evaluation of the Ultima Genomics UG 100™ sequencing platform for clinical services

Luca Santuari, Ilya Kolpakov, Anthony Blin, Ioannis Xénarios, Cédric Howald

This paper evaluates the Ultima Genomics UG 100 sequencing platform's ability to identify short variants, particularly in long homopolymer regions, compared to Illumina NovaSeq 6000 for clinical use.

bioRxiv · Dec 12, 2025 · PreprintBioinformatics

A novel anti-influenza combined therapy assessed by single cell RNA-sequencing

Chiara Medaglia, Ilya Kolpakov, Yong Zhu, Samuel Constant, Song Huang, Arnaud Charles‐Antoine Zwygart, Valeria Cagno, Emmanouil T. Dermitzakis, Francesco Stellacci, Ioannis Xénarios, Caroline Tapparel

This study evaluates a combined anti-influenza therapy using single cell RNA sequencing to show its effectiveness in inhibiting viral replication across different epithelial cell types.

bioRxiv · Jul 27, 2021 · PreprintGenomics