Yu Liu

Maternal plasma lipids are involved in the pathogenesis of preterm birth

This study identifies maternal plasma lipid metabolites associated with preterm birth using metabolomic analysis and machine learning in the Puerto Rico PROTECT cohort.

GranatumX: A community engaging, modularized and flexible webtool for single-cell analysis

GranatumX provides a web-based platform for single-cell RNA sequencing analysis, enabling biologists to use bioinformatics tools through a graphical interface and allowing developers to integrate their own tools into customizable pipelines.

Lilikoi V2.0: a deep-learning enabled, personalized pathway-based R package for diagnosis and prognosis predictions using metabolomics data

Lilikoi V2.0 is a new R package that uses deep learning and machine learning for disease classification and prognosis prediction using metabolomics data.

Evaluation of Cell Type Annotation R Packages on Single Cell RNA-seq Data

The paper evaluates ten cell-type annotation methods on scRNA-seq data, finding Seurat performs best for major cell types but struggles with rare populations and similar cell types.