Shahneen Kaur Sandhu

StrainSpy fits zero-inflated beta mixed models to containment ANI, reaching >98% simulated sensitivity versus ~79% for logistic regression and detecting colorectal-cancer E. coli strain shifts.

ClustoCell identifies cell states and markers from single-cell transcriptomes by analyzing transcriptional architecture, improving accuracy and stability over existing methods.

This paper identifies systemic reductions in dendritic cell (DC) numbers and activation markers in brain tumor patients, with brain tumors directly contributing to DC defects, and highlights corticosteroid use as a confounding factor.

SPIAT is an R package designed for spatial analysis of cells in tissues, offering tools for data processing, visualization, and analysis of spatially resolved single-cell data.

AmpliSolve improves SNV detection in deep sequencing data by estimating position-specific background noise, achieving good precision and sensitivity even at low VAFs.