Author
University of British ColumbiaORCID 0000-0002-8694-6045Unclaimed ORCID profile · follow to get notified of new preprints
Mutual co-authors in cluster
3 papers
Recent·Most cited
Timon Schneider, Abdul Muntakim Rafi, Cassandra Jensen, Daniella Liao, Yiren Zhao, Carl de Boer, Tom Ellis
Yorzoi predicts RNA-seq coverage for yeast DNA sequences, enabling in-silico testing and design of synthetic DNA constructs.
bioRxiv · Sep 20, 2025 · PreprintSynthetic Biology
Ishika Luthra, Cassandra Jensen, Xinyi E. Chen, Asfar Lathif Salaudeen, Abdul Muntakim Rafi, Carl G. de Boer
The paper quantifies the gene regulatory activity of naive DNA in yeast and human cells, finding that naive DNA can produce transcripts and chromatin marks similar to evolved sequences, suggesting biochemical activity is the default state.
Nature Structural & Molecular Biology · Mar 1, 2024Peer-reviewedGenomics
Nicholas Mateyko, Omar Tariq, Xinyi E. Chen, Will Cheney, Asfar Lathif Salaudeen, Ishika Luthra, Najmeh Nikpour, Abdul Muntakim Rafi, Hadis Kamali Deghan, Cassandra Jensen, Carl G. de Boer
GIL designs custom indexing primers for multiplexed sequencing, offering customization and compatibility with existing primers.
Bioinformatics · May 19, 2023Peer-reviewedBioinformatics