Automated detection and classification of polioviruses from nanopore sequencing reads using piranha
Aine Niamh O’Toole, Rachel Colquhoun, Corey Ansley, Catherine M. Troman, Daniel M. Maloney, Zoe Vance, Joyce Odeke Akello, Erika Bujáki, Manasi Majumdar, Adnan Khurshid, Yasir Arshad, Muhammad Masroor Alam, Javier Escalada-San Martín, Alex Shaw, Nicholas C. Grassly, Andrew Rambaut
The paper introduces piranha, a tool for automated detection and classification of polioviruses from nanopore sequencing reads, enabling efficient intratypic differentiation and identification of wild-type and vaccine-derived polioviruses.
Virus Evolution · Jan 1, 2024Peer-reviewedBioinformatics