Author

Daniel M. Maloney

National Health ServiceORCID 0009-0002-3239-2937Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:experimental assay· 2 Research Focus:differential expression· 1 Assay:long-read sequencing· 1 Research Focus:variant calling· 1 Organism:virus· 1 Assay:whole-genome sequencing· 1

Frequent Co-Authors

Adnan KhurshidiD· 1 shared Ailyn C. Pérez-OsorioiD· 1 shared Aine Niamh O’TooleiD· 1 shared Alex ShawiD· 1 shared Alexander L. GreningeriD· 1 shared Amelia Weixler· 1 shared Andrew RambautiD· 1 shared B. Ethan Nunley· 1 shared

Activity by Year

2024-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperBioinformatics

Adnan KhurshidORCID

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Author profile →

2 papers

Recent·Most cited

Clinical performance evaluation of a tiling amplicon panel for whole genome sequencing of respiratory syncytial virus

B. Ethan Nunley, Amelia Weixler, Hyeong Geon Kim, Hong Jian Xie, Jaydee Sereewit, Pooneh Hajian, Sean Ellis, Margaret G. Mills, Ailyn C. Pérez-Osorio, Stephanie Goya, Jolene P. Gov, Rebecca Dewar, Goncalo Fernandes, Kate E. Templeton, Daniel M. Maloney, , Pavitra Roychoudhury

The paper evaluates a tiling amplicon panel for RSV whole genome sequencing, showing high sensitivity, specificity, and accuracy in clinical and contrived samples.

Journal of Molecular Diagnostics · Jun 19, 2025Peer-reviewedGenomics

Automated detection and classification of polioviruses from nanopore sequencing reads using piranha

Aine Niamh O’Toole, Rachel Colquhoun, Corey Ansley, Catherine M. Troman, Daniel M. Maloney, Zoe Vance, Joyce Odeke Akello, Erika Bujáki, Manasi Majumdar, Adnan Khurshid, Yasir Arshad, Muhammad Masroor Alam, Javier Escalada-San Martín, Alex Shaw, Nicholas C. Grassly, Andrew Rambaut

The paper introduces piranha, a tool for automated detection and classification of polioviruses from nanopore sequencing reads, enabling efficient intratypic differentiation and identification of wild-type and vaccine-derived polioviruses.

Virus Evolution · Jan 1, 2024Peer-reviewedBioinformatics