SQANTI3: curation of long-read transcriptomes for accurate identification of known and novel isoforms
Francisco J. Pardo-Palacios, Ángeles Arzalluz-Luque, Liudmyla Kondratova, Pedro Salguero, Jorge Mestre‐Tomás, Rocío Amorín, Eva Estevan-Morió, Tianyuan Liu, Adalena V. Nanni, Lauren M. McIntyre, Elizabeth Tseng, Ana Conesa
SQANTI3 extends long-read transcriptome quality control with transcript-end subcategories, a short-read TSS ratio, rules or random-forest filters and a rescue module, raising SIRV-benchmarked F-score stepwise.
Nature Methods · Mar 20, 2024Peer-reviewedBioinformatics✦ In-depth digest