Elijah R. Bring Horvath

SeqForge: A scalable platform for alignment-based searches, motif detection, and sequence curation across meta/genomic datasets

SeqForge provides a scalable toolkit for alignment-based searches, motif detection, and sequence curation in metagenomic datasets, reducing the need for custom scripting.

An extremophilic Nocardiopsis strain from Great Salt Lake expands the taxonomic range of mycolic acid biosynthesis

The paper identifies a new Nocardiopsis strain from Great Salt Lake that produces mycolic acids, expanding the known taxonomic range of mycolic acid biosynthesis.

Global Footprint of the Multidrug Resistance Island Ec17R and Resistance Gene Co-Occurrence in Pathogenic Escherichia coli Isolates

The paper tracks a multidrug-resistant E. coli lineage over years, identifies a globally distributed resistance island, and finds resistance gene co-occurrence networks and antibiotic tolerance in isolates lacking known resistance mechanisms.

Resistance Gene Association and Inference Network (ReGAIN): A Bioinformatics Pipeline for Assessing Probabilistic Co-Occurrence Between Resistance Genes in Bacterial Pathogens

ReGAIN identifies and maps resistance gene networks in bacterial pathogens using Bayesian networks, providing insights into co-occurrence patterns and antimicrobial resistance dynamics.