Author

Sarah J. Wheelan

Johns Hopkins UniversityORCID 0000-0002-9002-0800Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:ChIP-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Assay:DNA methylation· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

Alexander V. FavoroviD· 2 shared Alessandro CulottiiD· 1 shared Alexander Baumann· 1 shared Alexander OstrovskyiD· 1 shared Alexandru MahmoudiD· 1 shared Alexey SizykhiD· 1 shared Alexey StupnikoviD· 1 shared Allie Hajian· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersBioinformatics

Alexander V. FavorovORCID

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3 papers

Recent·Most cited

Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL)

Michael C. Schatz, Anthony Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell‐Luria, , Jason Walker

The paper describes AnVIL, a cloud-based platform that enables genomic data analysis without data transfer, improving security, scalability, and collaboration.

Cell Genomics · Jan 1, 2022Peer-reviewedBioinformatics

Hobotnica: exploring molecular signature quality

Alexey Stupnikov, Alexey Sizykh, Alexander V. Favorov, Bahman Afsari, Sarah J. Wheelan, Luigi Marchionni, Yulia A. Medvedeva

Hobotnica estimates molecular signature quality by assessing their ability to stratify data and assign significance scores for comparing different groups.

bioRxiv · Sep 12, 2021 · PreprintBioinformatics

StereoGene: Rapid Estimation of Genomewide Correlation of Continuous or Interval Feature Data

Elena D. Stavrovskaya, Tejasvi S. Niranjan, Elana Judith Fertig, Sarah J. Wheelan, Alexander V. Favorov, Andrey A. Mironov

StereoGene estimates genomewide correlation of continuous genomic features, revealing spatial relationships between epigenomic features and splicing sites.

Bioinformatics · Jun 12, 2017Peer-reviewedBioinformatics