Austyn Trull

nf_xpatial: A Reproducible Framework for Standardized Preprocessing and Clustering of Xenium Data

nf_xpatial provides a standardized Nextflow pipeline for preprocessing and clustering Xenium spatial transcriptomics data, enabling reproducible analysis and parameter comparison.

A conserved population of genetically defined striatal neurons gates opioid reward

The paper identifies a rare striatal neuron population, Chst9-MSNs, that is critical for opioid reward and distinct from canonical pathways.

scnanoseq: an nf-core pipeline for Oxford Nanopore single-cell RNA-sequencing

The paper introduces a Nextflow-based pipeline for analyzing Oxford Nanopore single-cell RNA sequencing data, enabling gene and transcript-level quantification with portability and reproducibility.