Ranking genome-wide correlation measurements improves microarray and RNA-seq based global and targeted co-expression networks
Franziska Liesecke, Dimitri Daudu, Rodolphe Dugé de Bernonville, Sébastien Besseau, Marc Clastre, Vincent Courdavault, Johan‐Owen De Craene, Joël Crèche, Nathalie Giglioli‐Guivarc’h, Gaëlle Glévarec, Olivier Pichon, Thomas Dugé de Bernonville
The paper evaluates correlation methods for constructing co-expression networks using microarray and RNA-seq data in Arabidopsis thaliana, finding that PCC with HRR performs best for global networks and pathway-level correlations.
Scientific Reports · Jul 12, 2018Peer-reviewedBioinformatics